Technology


ReneGENE-AccuRA

We present AccuRA, a hardware accelerator targeting reconfigurable hardware platforms. The model scales well at multiple levels of granularity, which precisely aligns short reads, at a fine-grained single nucleotide resolution, and offers full coverage of the genome.


ReneGENE-GMAccS

We present GMAccS, a GPGPU based OpenCL solution, for the SRM accelerator. This employs a platform independent model, capable of targeting a heterogeneous set of GPU hardware.


ReneGENE-RNA

Coming soon.


Our Indexing schemes

We present a robust and efficient indexing scheme for the reference genome, which is devoid of heuristics. The scheme reports all possible regions of mapping for a short read, inclusive of repeat regions. The lookup scheme efficiently handles the redundancy in reads. Though this leaves the rest of the pipeline with more data for SRM as compared to the heuristic solutions, it provides the end user with reliable and actionable results.